PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Jcr4S02875.50
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
Family MYB_related
Protein Properties Length: 572aa    MW: 63974.9 Da    PI: 6.7178
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Jcr4S02875.50genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding28.14.9e-09433480448
                      S-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   4 WTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqkyl 48 
                      WT  E  +l+d+++q+G+g+W+ I + +      Rt+ +++++w+++l
    Jcr4S02875.50 433 WTLSEVTKLIDGIAQYGTGRWTDIKKLLFsssAYRTPIDLRDKWRNLL 480
                      ********************************99************96 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.609.1E-13422486IPR009057Homeodomain-like
PROSITE profilePS5129414.318425484IPR017930Myb domain
SMARTSM007178.2E-9429482IPR001005SANT/Myb domain
CDDcd116601.74E-16431481No hitNo description
SuperFamilySSF466891.5E-15431502IPR009057Homeodomain-like
PfamPF002493.1E-7433480IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 572 aa     Download sequence    Send to blast
MSADASSSLT EVNEMDRKAH VNKKFASMKC QRGDYVVKVD ETSVPAVEDE TIEVQHLLAE  60
PKPDHASVDG VLCFGGLDCN NTQGHDDLEL GVLDGLLDEV DEVDDIHAAN DISGACEDFL  120
LDIELAEKVS FLDCAPFGRL QLGNSSSESQ SPGFSGSSNV ANGLSESSTA TVPEAECKSG  180
SLKKRTVKCE LNDSSGNKWD YQAGVDVFTT SHDLEELDEV DYAKPLESGL SSDENEKKVV  240
QASKTGTLLR QKRTRKPTKR YIEEFSVPKS KHAVEGQNIL ATASKGEHLT IMSHNELQGA  300
TYVPKEETLS ETITQETLDD DEKLSDLKSK CVTGRRKVSS HASKDTRLKF ESRNELHHVR  360
GLEICSWRGS LSLELELELL FESRPRRGRP KKLPSASVLE SDEECTASES EDDCTKRRRS  420
KKSNDRRKHQ RMWTLSEVTK LIDGIAQYGT GRWTDIKKLL FSSSAYRTPI DLRDKWRNLL  480
RASSAQKQKL KQNKKELYRP VYKIQSPAGF EKPHMAILVE QKLNHAIRPL PKPVIRRIRE  540
LASLHPYPRF TPGGRYIQTG PQILNFSIWG CG
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012082380.10.0PREDICTED: uncharacterized protein LOC105642236 isoform X1
RefseqXP_012082381.10.0PREDICTED: uncharacterized protein LOC105642236 isoform X1
RefseqXP_012082382.10.0PREDICTED: uncharacterized protein LOC105642236 isoform X1
RefseqXP_012082383.10.0PREDICTED: uncharacterized protein LOC105642236 isoform X1
RefseqXP_012082384.10.0PREDICTED: uncharacterized protein LOC105642236 isoform X1
TrEMBLA0A067JZ120.0A0A067JZ12_JATCU; Uncharacterized protein
STRINGPOPTR_0006s12820.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF47162639
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72650.23e-20TRF-like 6